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ABOUT THIS RECORD
ID:
MNEST054986
species:
Zea mays
miRNA family:
MIR167
source:
PMRD, original name:
zma-miR167i
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG
miRNA*
GATCATGTTGCAGCTTCACT
mismatches:
0
bulges:
1
View larger
pre-miRNA
ACTTCGCTGGTGTGAGAGCT
TGAAGCTGCCAGCATGATCTG
GCTACTCAAACGCCGCCGGCCTCCCAAGTGCTCGATCGGTGGCGCTTCACCA
GATCATG
TTGCAGCTTCACT
CTCTCGCAACCAGCGAA
dot-bracket secondary structure
...(((((((((((((((..
(((((((((.(((((((((((
(.........((((((((..(............)..)))))))).....)))
)))))))
)))))))))))..
))))))).)))))))).
SIMILARITIES
miRBase
zma-MIR167i
:
1e-68
PMRD
zma-miR167k
:
4e-44
microPC
miR167
:
0.00002
UniProt
no hits
RFAM
MIR167_1: 9e-58
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D,
PLoS Genet. 5:e1000716(2009).
,
"A genome-wide characterization of microRNA genes in maize"
[
2
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"