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ABOUT THIS RECORD

ID: MNEST054987
species: Zea mays
miRNA family: MIR167
source: PMRD, original name: zma-miR167j

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG

miRNA*
GATCATGTTGCAGCTTCA

mismatches: 1
bulges: 1

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pre-miRNA
TGAAGCTGCCAGCATGATCTGGCTACTCAAACGCCGCCGGGCCTCCAAGTGCTCGATCGGTGGCGCTTCACCAGATCATGTTGCAGCTTCA

dot-bracket secondary structure
.((((((((.((((((((((((.........((((((((((((.....).)))....)))))))).....)))))))))))))))))))).


SIMILARITIES
miRBase zma-MIR167i: 3e-38

PMRD zma-miR167i: 2e-39

microPC miR167: 0.00002
UniProt no hits

RFAM MIR167_1: 7e-36

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"




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