ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR167
source: PMRD, original name: zma-miR167o
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGCATGACAGCCTCATT mismatches: 2 bulges: 1 |
pre-miRNA
GAGTGAAGCTGCCAGCATGATCTAGCTCTGATTTGGTTGGCACCATATTAGCAGGCGTCCACGCACAGCTAGACTAGAGTGGCCTCGCGCGCTCTCGTCT
GGTCTGTGTCTCGCTTTGTGCCTGCAAATCGTTGTTAGATCATGCATGACAGCCTCATTC
dot-bracket secondary structure
((((((.((((.((((((((((((((..(((((((...(((((.........(((((.....((((((((((((.((((((((...)).)))))).))))
)).))))))..))))).)))))..)))))))..)))))))))))).)).)))).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGTGAAGCTGCCAGCATGATCTAGCTCTGATTTGGTTGGCACCATATTAGCAGGCGTCCACGCACAGCTAGACTAGAGTGGCCTCGCGCGCTCTCGTCT
GGTCTGTGTCTCGCTTTGTGCCTGCAAATCGTTGTTAGATCATGCATGACAGCCTCATTC
dot-bracket secondary structure
((((((.((((.((((((((((((((..(((((((...(((((.........(((((.....((((((((((((.((((((((...)).)))))).))))
)).))))))..))))).)))))..)))))))..)))))))))))).)).)))).))))))
SIMILARITIES| miRBase zma-MIR167a: 1e-87 PMRD zma-miR167a: 1e-87 microPC miR167: 0.000002 | UniProt no hits RFAM MIR167_1: 0.000000000003 |
Identical with: zma-miR167a from PMRD (MNEST054978) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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