ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR167
source: PMRD, original name: zma-miR167r
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGCTGTGACAGTTTCACT mismatches: 0 bulges: 2 |
pre-miRNA
AAAGGGTGAAGCTGCCAGCATGATCTAACGACGGCATTGCTCTGCTGCTGCAGTGAGGCTTGCGAGTGATGGTTAGATCATGCTGTGACAGTTTCACTCT
TT
dot-bracket secondary structure
(((((((((((((((((((((((((((((.....(((..(((.((.(((.......)))..)))))..))))))))))))))))).).))))))))))))
))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AAAGGGTGAAGCTGCCAGCATGATCTAACGACGGCATTGCTCTGCTGCTGCAGTGAGGCTTGCGAGTGATGGTTAGATCATGCTGTGACAGTTTCACTCT
TT
dot-bracket secondary structure
(((((((((((((((((((((((((((((.....(((..(((.((.(((.......)))..)))))..))))))))))))))))).).))))))))))))
))
SIMILARITIES| miRBase zma-MIR167b: 4e-53 PMRD zma-miR167b: 4e-53 microPC miR167: 0.00002 | UniProt no hits RFAM MIR167_1: 4e-16 |
Identical with: zma-miR167b from PMRD (MNEST054979) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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