ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: PMRD, original name: zma-miR169a
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAAGTTGTTCTTGGCTACA mismatches: 3 bulges: 0 |
pre-miRNA
TAGGCTCGGGGACTATGGTGCAGCCAAGGATGACTTGCCGATCGATGTGACGCCTCTTGATCTCGTCGTCGTCAGATCGTCGCCGATCATCGGCAAGTTG
TTCTTGGCTACACCGTGGCTCCTGCTCCTG
dot-bracket secondary structure
((((..((((..((((((((.(((((((((..(((((((((..(((((((((...........))))).)))).(((((....))))).)))))))))..
))))))))).))))))))..))))..))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
TAGGCTCGGGGACTATGGTGCAGCCAAGGATGACTTGCCGATCGATGTGACGCCTCTTGATCTCGTCGTCGTCAGATCGTCGCCGATCATCGGCAAGTTG
TTCTTGGCTACACCGTGGCTCCTGCTCCTG
dot-bracket secondary structure
((((..((((..((((((((.(((((((((..(((((((((..(((((((((...........))))).)))).(((((....))))).)))))))))..
))))))))).))))))))..))))..))))
SIMILARITIES| miRBase zma-MIR169a: 9e-70 PMRD zma-miR169u: 7e-46 microPC miR169: 0.0000001 | UniProt no hits RFAM MIR169_2: 0.00000000003 |
Identical with: zma-miR169u from PMRD (MNEST055023) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
