ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: PMRD, original name: zma-miR169g
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCGGTCTCCTTGGCTAGCC mismatches: 0 bulges: 3 |
pre-miRNA
CAGAGCTAGCCTGCCTCTGGTAGCCAAGGATGACTTGCCTACATGGTCTCGCTAGTTCCGGTTGTTGCATGCATGCCACTATGCCAGTCCTGCTGGGTTT
GTGGGCGGTCTCCTTGGCTAGCCTGAGTGGCTCTTGCCTG
dot-bracket secondary structure
(((.((.((((...(((.((((((((((((.((((.(((((((....((((.(((..(.(((.((.(((....))).))...))).)..))).))))..)
))))))))))))))))))).))).))).))))...)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CAGAGCTAGCCTGCCTCTGGTAGCCAAGGATGACTTGCCTACATGGTCTCGCTAGTTCCGGTTGTTGCATGCATGCCACTATGCCAGTCCTGCTGGGTTT
GTGGGCGGTCTCCTTGGCTAGCCTGAGTGGCTCTTGCCTG
dot-bracket secondary structure
(((.((.((((...(((.((((((((((((.((((.(((((((....((((.(((..(.(((.((.(((....))).))...))).)..))).))))..)
))))))))))))))))))).))).))).))))...)))))
SIMILARITIES| miRBase zma-MIR169g: 1e-75 PMRD sbi-miR169c: 5e-19 microPC miR169: 0.00003 | UniProt no hits RFAM MIR169_5: 9e-18 |
Identical with: zma-MIR169g from miRBase (MNEST042749) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
