ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: PMRD, original name: zma-miR169i
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGCC mismatches: 0 bulges: 3 |
pre-miRNA
GATGAGAGTGGTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTGCTGGCCACGCTCCCCTCATGCAAGGACCATCTCGTGTCGACCGACGAGCGAGCGA
GCGATCGATCGATGAGAGGATGACGAAGCTTGGGGTGTACGTTGGTCTCTCACGGGCAGTCTCCTTGGCTAGCCCTGACTCACTCTTACCG
dot-bracket secondary structure
(.((((((((..((.((.((((((((((((.((((.(((((((.(..(((((((..(.(((((.((..(...((((((..(((((.(((((..(....).
.)).))).)))))..)).)))).)...)).))))).)..)).))))).).)))))))))))))))))))).)))..)))))))))))).).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GATGAGAGTGGTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTGCTGGCCACGCTCCCCTCATGCAAGGACCATCTCGTGTCGACCGACGAGCGAGCGA
GCGATCGATCGATGAGAGGATGACGAAGCTTGGGGTGTACGTTGGTCTCTCACGGGCAGTCTCCTTGGCTAGCCCTGACTCACTCTTACCG
dot-bracket secondary structure
(.((((((((..((.((.((((((((((((.((((.(((((((.(..(((((((..(.(((((.((..(...((((((..(((((.(((((..(....).
.)).))).)))))..)).)))).)...)).))))).)..)).))))).).)))))))))))))))))))).)))..)))))))))))).).
SIMILARITIES| miRBase zma-MIR169i: 5e-106 PMRD sbi-miR169e: 0.000000000000003 microPC miR169: 1e-82 | UniProt no hits RFAM MIR169_5: 0.00000000005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
