ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: PMRD, original name: zma-miR169j
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGTC mismatches: 0 bulges: 3 |
pre-miRNA
GCGATAAGAGTCTGTCCAGATAGCCAAGGATGACTTGCCTGTGGCTTCTTGGCTTGGCTTGGCTCGGGCAAAACCTTGTGCACGTTTTATTGCTCGCCTC
GTGGCCTCGATCACAGGCAGTCTCCTTGGCTAGTCCGGGCGGGCCCCTTAT
dot-bracket secondary structure
...(((((.((((((((.((((((((((((.((((.((((((((..((..((((..((..(((..((((((.....((....)).....)))))))))..
))))))..))))))))))))))))))))))).))).))))))))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GCGATAAGAGTCTGTCCAGATAGCCAAGGATGACTTGCCTGTGGCTTCTTGGCTTGGCTTGGCTCGGGCAAAACCTTGTGCACGTTTTATTGCTCGCCTC
GTGGCCTCGATCACAGGCAGTCTCCTTGGCTAGTCCGGGCGGGCCCCTTAT
dot-bracket secondary structure
...(((((.((((((((.((((((((((((.((((.((((((((..((..((((..((..(((..((((((.....((....)).....)))))))))..
))))))..))))))))))))))))))))))).))).))))))))..)))))
SIMILARITIES| miRBase zma-MIR169j: 3e-82 PMRD sbi-miR169g: 1e-29 microPC miR169: 9e-58 | UniProt no hits RFAM MIR169_5: 2e-80 |
Identical with: zma-MIR169j from miRBase (MNEST042752) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
