ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: PMRD, original name: zma-miR169m
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAGTCTCCTTGGCTA mismatches: 1 bulges: 2 |
pre-miRNA
TAGCCAAGGATGACTTGCCTATGTCCTTTGTTTACAAAGGACCTGAATGTGTGGACCATTGAGAGGTTCATAGGCAGTCTCCTTGGCTA
dot-bracket secondary structure
((((((((((.((((.((((..((((((((....))))))))........(((((((.......)))))))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
TAGCCAAGGATGACTTGCCTATGTCCTTTGTTTACAAAGGACCTGAATGTGTGGACCATTGAGAGGTTCATAGGCAGTCTCCTTGGCTA
dot-bracket secondary structure
((((((((((.((((.((((..((((((((....))))))))........(((((((.......)))))))))))))))))))))))))
SIMILARITIES| miRBase zma-MIR169d: 2e-45 PMRD zma-miR169d: 2e-45 microPC miR169: 0.00000002 | UniProt no hits RFAM MIR169_2: 9e-20 |
Identical with: zma-miR169d from PMRD (MNEST055006) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
