ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169_7
source: PMRD, original name: zma-miR169n
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCGG miRNA* GGCAGGTTCTTCTCTTTGGCTAC mismatches: 1 bulges: 3 |
pre-miRNA
GTAGCCAAGGATGACTTGCCGGCCGACATATGCCTCTCTCGTTCGTCCCTGACCGGCCGGGAAACACATCACGCCGCATGCATGCATGCATGCATATGTG
TGTACGTACTACGTGTGCATGCATGCATGTGCTGCCGCGCGCAGCAAACTGCGAGGAATCGTCCGTCCGGCAGGTTCTTCTCTTTGGCTAC
dot-bracket secondary structure
(((((((((((.(((((((((((.(((.....(((((((((..((........))..))))).........(((.(((((((((((((((((((((((((
.((....)))))))))))))))))))))))).))).))).((((....))))))))....))).).))))))))))....)))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GTAGCCAAGGATGACTTGCCGGCCGACATATGCCTCTCTCGTTCGTCCCTGACCGGCCGGGAAACACATCACGCCGCATGCATGCATGCATGCATATGTG
TGTACGTACTACGTGTGCATGCATGCATGTGCTGCCGCGCGCAGCAAACTGCGAGGAATCGTCCGTCCGGCAGGTTCTTCTCTTTGGCTAC
dot-bracket secondary structure
(((((((((((.(((((((((((.(((.....(((((((((..((........))..))))).........(((.(((((((((((((((((((((((((
.((....)))))))))))))))))))))))).))).))).((((....))))))))....))).).))))))))))....)))))))))))
SIMILARITIES| miRBase sbi-MIR169j: 0.0000002 PMRD zma-miR169p: 0.0000002 microPC miR169: 0.0000006 | UniProt no hits RFAM MIR169_2: 0.000003 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
