ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169_1
source: PMRD, original name: zma-miR169o
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCGG miRNA* GGCAGCTCGATCGTGTGCTAGC mismatches: 3 bulges: 3 |
pre-miRNA
CCCGGCAGCTCGATCGTGTGCTAGCTCATCAGCTTACACTTAGCAAGCAAATGAAGCATGCAGTTCTCGCCATGAGTATAAATTATCATCTGAGGCCTTG
CATGTGGGGATGAGGCTGTTATGTAGCCAAGGATGACTTGCCGGG
dot-bracket secondary structure
((((((((.((.(((.((.(((((((((((.((((.(.....).)))).......((((((((..((((..((((..........)))).))))..).))
)))))...))))).))).......)))))..))))).))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
CCCGGCAGCTCGATCGTGTGCTAGCTCATCAGCTTACACTTAGCAAGCAAATGAAGCATGCAGTTCTCGCCATGAGTATAAATTATCATCTGAGGCCTTG
CATGTGGGGATGAGGCTGTTATGTAGCCAAGGATGACTTGCCGGG
dot-bracket secondary structure
((((((((.((.(((.((.(((((((((((.((((.(.....).)))).......((((((((..((((..((((..........)))).))))..).))
)))))...))))).))).......)))))..))))).))))))))
SIMILARITIES| miRBase bdi-MIR169b: 0.0000005 PMRD bdi-miR169b: 0.0000005 microPC miR169: 0.0001 | UniProt no hits RFAM MIR169_2: 0.0000001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
