ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: PMRD, original name: zma-miR169r
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTCTGTCCTTGGCTA mismatches: 2 bulges: 1 |
pre-miRNA
CAGCCAAGGATGACTTGCCGGCTCCTGGAACCTGGAGGCGTCTCAGCTTGCTGTGCTGTGGCTTAGAACTTAGTCGGCAAGTCTGTCCTTGGCTA
dot-bracket secondary structure
.(((((((((((((((((((.((((.(....).))))..(((.((((.......)))).)))............))))))))).)))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
CAGCCAAGGATGACTTGCCGGCTCCTGGAACCTGGAGGCGTCTCAGCTTGCTGTGCTGTGGCTTAGAACTTAGTCGGCAAGTCTGTCCTTGGCTA
dot-bracket secondary structure
.(((((((((((((((((((.((((.(....).))))..(((.((((.......)))).)))............))))))))).)))))))))).
SIMILARITIES| miRBase zma-MIR169c: 5e-49 PMRD zma-miR169c: 5e-49 microPC miR169: 1e-43 | UniProt no hits RFAM MIR169_2: 9e-48 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
