ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: PMRD, original name: zma-miR169s
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAAGTCATCATTGGCT mismatches: 2 bulges: 0 |
pre-miRNA
CAGCCAAGGATGACTTGCCGACCTATTTTTCTTTTAACATTCCAATGTAAATCCATGGCATATATATATGGTTGTATATCATATTGAAGTCCAGATCTAG
AACATTATAATAAATGTTATATAGGGTTTATCGGCAAGTCATCATTGGCT
dot-bracket secondary structure
.((((((.(((((((((((((...............((((....))))((((((.(((.((....(((((((.....)))))))....))))).......
((((((......)))))).....)))))).))))))))))))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGCCAAGGATGACTTGCCGACCTATTTTTCTTTTAACATTCCAATGTAAATCCATGGCATATATATATGGTTGTATATCATATTGAAGTCCAGATCTAG
AACATTATAATAAATGTTATATAGGGTTTATCGGCAAGTCATCATTGGCT
dot-bracket secondary structure
.((((((.(((((((((((((...............((((....))))((((((.(((.((....(((((((.....)))))))....))))).......
((((((......)))))).....)))))).))))))))))))).))))))
SIMILARITIES| miRBase tcc-MIR169b: 0.000002 PMRD zma-miR169t: 0.00003 microPC miR169: 0.00003 | UniProt no hits RFAM MIR169_2: 0.0005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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