ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR171
source: PMRD, original name: zma-miR170m
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCATGGCTCAATCAAC mismatches: 0 bulges: 0 |
pre-miRNA
GCGATGTTGGCATGGCTCAATCAACTCGCCGGCCGCGGGTGGCTTAGCTTATTAATTCTGCGCGTTCGATCGAGGTGCGGGCGCAGTGTTTAATTGATTG
AGCCGTGCCAATATC
dot-bracket secondary structure
..(((((((((((((((((((((....((((.(....).)))).......(((((..((((((..(((((....)).)))))))))...)))))))))))
)))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCGATGTTGGCATGGCTCAATCAACTCGCCGGCCGCGGGTGGCTTAGCTTATTAATTCTGCGCGTTCGATCGAGGTGCGGGCGCAGTGTTTAATTGATTG
AGCCGTGCCAATATC
dot-bracket secondary structure
..(((((((((((((((((((((....((((.(....).)))).......(((((..((((((..(((((....)).)))))))))...)))))))))))
)))))))))))))))
SIMILARITIES| miRBase zma-MIR171f: 9e-45 PMRD zma-miR171m: 1e-59 microPC miR171: 9e-45 | UniProt no hits RFAM MIR171_1: 2e-52 |
Identical with: zma-miR171m from PMRD (MNEST055039) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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