ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR171
source: PMRD, original name: zma-miR170p
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* TAGGAGGGTGCGGGTGCCCC mismatches: 5 bulges: 5 |
pre-miRNA
GGATAGGAGGGTGCGGGTGCCCCGGCGGTGAGGGGAGCCGGTGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
.((((....(((((((.(.(.(((((..........))))).)....).)))))))..))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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GGATAGGAGGGTGCGGGTGCCCCGGCGGTGAGGGGAGCCGGTGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
.((((....(((((((.(.(.(((((..........))))).)....).)))))))..))))
SIMILARITIES| miRBase bdi-MIR171a: 0.000003 PMRD ppd-miR170: 0.0000007 microPC miR171: 0.0002 | UniProt no hits RFAM MIR171_1: 0.0007 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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