ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR171_1
source: PMRD, original name: zma-miR171a
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATAT miRNA* ATTGGCGAGGTTCAATCAGA mismatches: 1 bulges: 0 |
pre-miRNA
GATATTGGCGAGGTTCAATCAGATGATGTATTTTTCTTATATATAAATTTGCATGCATGAAGGTGTGAATCCAGTGTCTGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
((((((((((.(((((((((((((.((((((.......))))))..(((..(((........)))..))).....))))))))))))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GATATTGGCGAGGTTCAATCAGATGATGTATTTTTCTTATATATAAATTTGCATGCATGAAGGTGTGAATCCAGTGTCTGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
((((((((((.(((((((((((((.((((((.......))))))..(((..(((........)))..))).....))))))))))))).))))))))))
SIMILARITIES| miRBase zma-MIR171a: 2e-51 PMRD sbi-miR171j: 0.000001 microPC miR171: 0.0003 | UniProt no hits RFAM MIR171_1: 0.00002 |
Identical with: zma-MIR171a from miRBase (MNEST042761) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
