miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST055029
species:
Zea mays
miRNA family:
MIR171_1
source:
PMRD, original name:
zma-miR171b
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGAGCCGTGCCAATATCAC
miRNA*
GATATTGGCGCGGTTCAATC
mismatches:
1
bulges:
0
View larger
pre-miRNA
CGG
GATATTGGCGCGGTTCAATC
AGAAAGCTTGCGCTCCAGGCCCGAGGGGCTCCACTCTTTGA
TTGAGCCGTGCCAATATCAC
G
dot-bracket secondary structure
((.
((((((((((((((((((((
(((.((...(.(((((........))))).)..)).)))))
)))))))))))))))))).)
)
SIMILARITIES
miRBase
zma-MIR171b
:
4e-43
PMRD
sbi-miR171k
:
1e-33
microPC
miR171
:
2e-26
UniProt
no hits
RFAM
MIR171_1: 3e-32
Identical with:
zma-MIR171b
from miRBase (
MNEST042762
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Maher C, Timmermans M, Stein L, Ware D,
Proc IEEE CSB :718-723(2004).
,
"Identifying microRNAs in plant genomes"
[
2
] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D,
PLoS Genet. 5:e1000716(2009).
,
"A genome-wide characterization of microRNA genes in maize"