ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR171
source: PMRD, original name: zma-miR171j
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TATTGACGCGGTTCAATTCGA mismatches: 2 bulges: 0 |
pre-miRNA
AATGGCCGCGAGCTAGACGGGGTATTGACGCGGTTCAATTCGAGAGCTCGAGCCCTAGCAGAGGCCAGGGGGGGTGGGGCTCTGCTCTCTGATTGAGCCG
TGCCAATATCACGTCCCACTCGCCCTCGC
dot-bracket secondary structure
...((..(((((...((((.(((((((.((((((((((((.((((((..((((((((.(.....((....))).)))))))).)))))).))))))))))
)).))))))).))))...)))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AATGGCCGCGAGCTAGACGGGGTATTGACGCGGTTCAATTCGAGAGCTCGAGCCCTAGCAGAGGCCAGGGGGGGTGGGGCTCTGCTCTCTGATTGAGCCG
TGCCAATATCACGTCCCACTCGCCCTCGC
dot-bracket secondary structure
...((..(((((...((((.(((((((.((((((((((((.((((((..((((((((.(.....((....))).)))))))).)))))).))))))))))
)).))))))).))))...)))))))....
SIMILARITIES| miRBase zma-MIR171j: 1e-56 PMRD sbi-miR171b: 2e-21 microPC miR171: 0.0000001 | UniProt no hits RFAM MIR171_1: 3e-45 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
