ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR171
source: PMRD, original name: zma-miR171k
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGAGCCGAACCAATATCACT miRNA* GTGGTATTGTTTCGGCTCATGT mismatches: 1 bulges: 1 |
pre-miRNA
GGGAGGAAGAAGACGACATGGCGTGGTATTGTTTCGGCTCATGTCCTTCTTGACTGGATGTGATGTGAGCCGAACCAATATCACTCATGTATTCTTCATT
CTGA
dot-bracket secondary structure
.((((((((((....((((((.(((((((((.((((((((((((((.(((.....))).).))))))))))))).))))))))))))))).)))))).))
))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GGGAGGAAGAAGACGACATGGCGTGGTATTGTTTCGGCTCATGTCCTTCTTGACTGGATGTGATGTGAGCCGAACCAATATCACTCATGTATTCTTCATT
CTGA
dot-bracket secondary structure
.((((((((((....((((((.(((((((((.((((((((((((((.(((.....))).).))))))))))))).))))))))))))))).)))))).))
))..
SIMILARITIES| miRBase zma-MIR171k: 2e-54 PMRD sbi-miR171e: 1e-22 microPC miR171: 0.0000003 | UniProt no hits RFAM MIR171_2: 1e-19 |
Identical with: zma-MIR171k from miRBase (MNEST042771) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
