ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR171_1
source: PMRD, original name: zma-miR171m
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGTTGGCATGGCTCAATCA miRNA* ATTGAGCCGTGCCAATATC mismatches: 0 bulges: 0 |
pre-miRNA
GATGTTGGCATGGCTCAATCAACTCGCCGGCCGCGGGTGGCTTAGCTTATTAATTCTGCGCGTTCGATCGAGGTGCGGGCGCAGTGTTTAATTGATTGAG
CCGTGCCAATATC
dot-bracket secondary structure
(((((((((((((((((((((....((((.(....).)))).......(((((..((((((..(((((....)).)))))))))...)))))))))))))
)))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GATGTTGGCATGGCTCAATCAACTCGCCGGCCGCGGGTGGCTTAGCTTATTAATTCTGCGCGTTCGATCGAGGTGCGGGCGCAGTGTTTAATTGATTGAG
CCGTGCCAATATC
dot-bracket secondary structure
(((((((((((((((((((((....((((.(....).)))).......(((((..((((((..(((((....)).)))))))))...)))))))))))))
)))))))))))))
SIMILARITIES| miRBase zma-MIR171f: 1e-43 PMRD zma-miR170m: 1e-59 microPC miR171: 1e-43 | UniProt no hits RFAM MIR171_1: 3e-51 |
Identical with: zma-miR170m from PMRD (MNEST055024) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
