ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR172
source: PMRD, original name: zma-miR172c
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCA miRNA* CAGCACCACCAAGATTCACA mismatches: 3 bulges: 0 |
pre-miRNA
GTGCAGCACCACCAAGATTCACATCCAACTCTCACGCATCTTCAGTGATGCATGCATGCTCTGTGATGTCTCGCAGCAGCTATATGCATATGTGATGAGA
TGAGAATCTTGATGATGCTGCAT
dot-bracket secondary structure
((((((((.((.((((((((.((((((....(((((((((......))))).((((((((((((((....)))))).)))...)))))...)))))).))
)).)))))))).)).))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GTGCAGCACCACCAAGATTCACATCCAACTCTCACGCATCTTCAGTGATGCATGCATGCTCTGTGATGTCTCGCAGCAGCTATATGCATATGTGATGAGA
TGAGAATCTTGATGATGCTGCAT
dot-bracket secondary structure
((((((((.((.((((((((.((((((....(((((((((......))))).((((((((((((((....)))))).)))...)))))...)))))).))
)).)))))))).)).))))))))
SIMILARITIES| miRBase zma-MIR172c: 1e-65 PMRD sbi-miR172c: 7e-18 microPC miR172: 0.000002 | UniProt no hits RFAM mir-172: 1e-16 |
Identical with: zma-MIR172c from miRBase (MNEST042777) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
