ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR390
source: PMRD, original name: zma-miR390
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCTATCCTGAGCTC mismatches: 3 bulges: 0 |
pre-miRNA
AAGCTCAGGAGGGATAGCGCCTAGGAAAACACATAGATCGGAGCCGGCCGCGAGGAGAAAGAAAGAGCCAAGAGATATGTGTGATGAATAATCTACATGG
ATCTTGGCTAGCTTTTGTGTTCTCCTCTGGAGGCGTGGTTCTGTCTATCAATCTGAAGCGCTATCTATCCTGAGCTC
dot-bracket secondary structure
.(((((((((.(((((((((...(((......(((((.(((((((((((..((((((((.(((((((((((((..((((((.(((.....))))))))).
.))))))))..)))))...))))))))....))).)))))))))))))...)))...))))))))).))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AAGCTCAGGAGGGATAGCGCCTAGGAAAACACATAGATCGGAGCCGGCCGCGAGGAGAAAGAAAGAGCCAAGAGATATGTGTGATGAATAATCTACATGG
ATCTTGGCTAGCTTTTGTGTTCTCCTCTGGAGGCGTGGTTCTGTCTATCAATCTGAAGCGCTATCTATCCTGAGCTC
dot-bracket secondary structure
.(((((((((.(((((((((...(((......(((((.(((((((((((..((((((((.(((((((((((((..((((((.(((.....))))))))).
.))))))))..)))))...))))))))....))).)))))))))))))...)))...))))))))).))))))))).
SIMILARITIES| miRBase zma-MIR390a: 1e-97 PMRD osa-miR390: 0.00004 microPC miR390: 0.00004 | UniProt no hits RFAM MIR390: 0.0006 |
Identical with: zma-MIR390a from miRBase (MNEST042784) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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