ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR393
source: PMRD, original name: zma-miR393d
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATTGCACTGATC miRNA* TCAATGCGATCCCTTTGGAGT mismatches: 1 bulges: 0 |
pre-miRNA
ATTCCAAAGGGATTGCACTGATCTTGTCGTCGACTCGCATCGCATGCAGCAGGCGGCAGGTGAGAATAGATCAATGCGATCCCTTTGGAGT
dot-bracket secondary structure
(((((((((((((((((.(((((((((((((..((.((((...))))))..))))))).........)))))).)))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATTCCAAAGGGATTGCACTGATCTTGTCGTCGACTCGCATCGCATGCAGCAGGCGGCAGGTGAGAATAGATCAATGCGATCCCTTTGGAGT
dot-bracket secondary structure
(((((((((((((((((.(((((((((((((..((.((((...))))))..))))))).........)))))).)))))))))))))))))
SIMILARITIES| miRBase zma-MIR393a: 1e-46 PMRD zma-miR393: 1e-46 microPC miR393: 0.000004 | UniProt no hits RFAM no hits |
Identical with: zma-MIR393a from miRBase (MNEST042786) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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