ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR393
source: PMRD, original name: zma-miR393e
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATTGCACTGATC miRNA* TCAATGCGATCCCTTTGGAGT mismatches: 1 bulges: 0 |
pre-miRNA
ATTCCAAAGGGATTGCACTGATCTTGTCGTCGACTCGCATCGCATGCAGCAGCGGCAGTGAGAATAGATCAATGCGATCCCTTTGGAGT
dot-bracket secondary structure
(((((((((((((((((.((((((((((((.(.((.((((...))))))).))))))........)))))).)))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATTCCAAAGGGATTGCACTGATCTTGTCGTCGACTCGCATCGCATGCAGCAGCGGCAGTGAGAATAGATCAATGCGATCCCTTTGGAGT
dot-bracket secondary structure
(((((((((((((((((.((((((((((((.(.((.((((...))))))).))))))........)))))).)))))))))))))))))
SIMILARITIES| miRBase zma-MIR393a: 4e-37 PMRD zma-miR393c: 4e-43 microPC miR393: 0.000004 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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