ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR2118
source: PMRD, original name: zma-miR2118g
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCTGATGCCTCCTATTCCTA miRNA* GGAATAGGAACATGAAGGAAAG mismatches: 2 bulges: 2 |
pre-miRNA
GCCAGGAAAAGGATGAAAGATTCTAAGAGCACTAGGAATAGGAACATGAAGGAAAGCATTATTGTGCATGGAGATTTAGGCCTGATGTTTTCCTGATGCC
TCCTATTCCTAAGGCTCTTAGGTTCTCCTTCCCTTTCCTTATGGC
dot-bracket secondary structure
(((((((((.(((....(((..((((((((..(((((((((((.(((..((((((((((((..(.((.(((....))).))))))))))))))).)))..
)))))))))))..))))))))..)))...))).)))))...))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
GCCAGGAAAAGGATGAAAGATTCTAAGAGCACTAGGAATAGGAACATGAAGGAAAGCATTATTGTGCATGGAGATTTAGGCCTGATGTTTTCCTGATGCC
TCCTATTCCTAAGGCTCTTAGGTTCTCCTTCCCTTTCCTTATGGC
dot-bracket secondary structure
(((((((((.(((....(((..((((((((..(((((((((((.(((..((((((((((((..(.((.(((....))).))))))))))))))).)))..
)))))))))))..))))))))..)))...))).)))))...))))
SIMILARITIES| miRBase zma-MIR2118g: 1e-78 PMRD zma-miR2118e: 0.000000007 microPC no hits | UniProt no hits RFAM MIR2118: 4e-48 |
Identical with: zma-MIR2118g from miRBase (MNEST042843) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
