ABOUT THIS RECORDspecies: Picea glauca
miRNA family: miR3710
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGAACCTGACGGGCCTCCA miRNA* GGAACCTGACGGGCCTCCTAAG mismatches: 4 bulges: 1 |
pre-miRNA
GCTACACTCTGCAGACGCTTCCAGACTCGTTTGGGAACCTGACGGGCCTCCAAAGTCTTAAAATGCACACTTGCTGCGCTTTGCAGACGCTTCCAGACTC
TGTTGGGAACCTGACGGGCCTCCAAAGTCTTAACATGTCCAATTGCTCCACTCTGCAAGCGCTTCCAGACTCGGTTGGGAACCTGACGGGCCTCCTAAGT
CTTGACATGTCCCTTTGCTTCACTCTG
dot-bracket secondary structure
..........(((((((..((.(((((....(((((.((((.((((..((((((((((..((..(((....))).((((((.(((((.((.....(((..
((((((((..((...((....))..)))))))))).))).....)).....)))))))))))))..)))))...)))))..)))).))))..))))))))
)).))..))))....))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCTACACTCTGCAGACGCTTCCAGACTCGTTTGGGAACCTGACGGGCCTCCAAAGTCTTAAAATGCACACTTGCTGCGCTTTGCAGACGCTTCCAGACTC
TGTTGGGAACCTGACGGGCCTCCAAAGTCTTAACATGTCCAATTGCTCCACTCTGCAAGCGCTTCCAGACTCGGTTGGGAACCTGACGGGCCTCCTAAGT
CTTGACATGTCCCTTTGCTTCACTCTG
dot-bracket secondary structure
..........(((((((..((.(((((....(((((.((((.((((..((((((((((..((..(((....))).((((((.(((((.((.....(((..
((((((((..((...((....))..)))))))))).))).....)).....)))))))))))))..)))))...)))))..)))).))))..))))))))
)).))..))))....))).........
SIMILARITIES| miRBase pab-MIR3710: 4e-36 PMRD pta-miR1315: 0.00000001 microPC no hits | UniProt sp|Q7XA42|RGA1_SOLBU: 0.00000003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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