ABOUT THIS RECORDspecies: Populus tremula
miRNA family: MIRf144
source: miRNEST
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGCTTGTTTGGTAGCCAAG miRNA* TGGCTAACTGACAAGCTCTTA mismatches: 3 bulges: 0 |
pre-miRNA
AAATTCGAGACGATAGCCTTACATGAAGATAAGAGCTTGTTTGGTAGCCAAGGACGACTTGTCCGCCACCATCTTAGTTAGTTCCAGTATAATATTACTG
GGCACCTTCCATTTGGTTTTGGGCAAGCACCTTGGCTAACTGACAAGCTCTTATCAATCATGCTAGGCTCTTTTTCTCTTC
dot-bracket secondary structure
......((((.((.(((((..(((((.((((((((((((((...(((((((((....((((((((..((((...........(((((((......)))))
))...........))))..))))))))..)))))))))...))))))))))))))..)))))..)))))..)).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAATTCGAGACGATAGCCTTACATGAAGATAAGAGCTTGTTTGGTAGCCAAGGACGACTTGTCCGCCACCATCTTAGTTAGTTCCAGTATAATATTACTG
GGCACCTTCCATTTGGTTTTGGGCAAGCACCTTGGCTAACTGACAAGCTCTTATCAATCATGCTAGGCTCTTTTTCTCTTC
dot-bracket secondary structure
......((((.((.(((((..(((((.((((((((((((((...(((((((((....((((((((..((((...........(((((((......)))))
))...........))))..))))))))..)))))))))...))))))))))))))..)))))..)))))..)).))))...
SIMILARITIES| miRBase ptc-MIR169af: 3e-36 PMRD ptc-miRf12009-akr: 4e-51 microPC no hits | UniProt no hits RFAM MIR169_5: 7e-44 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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