ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf164
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGATCCGTCACGATGTGGT miRNA* CGCATCTCGTGGATCGTTTG mismatches: 3 bulges: 1 |
pre-miRNA
GTGGTTGTGACCGGTGGTGCTGGATTCGTTGGATCGCATCTCGTGGATCGTTTGATGGCTAGAGGAGATACTGTGATTGTTGTTGATAATTTCTTCACTG
GAAGGAAAGAGAACGTTATGCACCATTTCAGTAACCCTAACTTTGAGATGATCCGTCACGATGTGGTTGAGCCGATTCTTCTTGAGGTTGATCAGATC
dot-bracket secondary structure
.(((((..((((...((....(((((.(((.(((((((((...((((((((((...((.(((.((...(((((.((((((...((((..((((((..((.
...)).))))))..)))).)))..))).))))).))))).))...))))))))))....))))))))).))).)))))..))...)))))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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GTGGTTGTGACCGGTGGTGCTGGATTCGTTGGATCGCATCTCGTGGATCGTTTGATGGCTAGAGGAGATACTGTGATTGTTGTTGATAATTTCTTCACTG
GAAGGAAAGAGAACGTTATGCACCATTTCAGTAACCCTAACTTTGAGATGATCCGTCACGATGTGGTTGAGCCGATTCTTCTTGAGGTTGATCAGATC
dot-bracket secondary structure
.(((((..((((...((....(((((.(((.(((((((((...((((((((((...((.(((.((...(((((.((((((...((((..((((((..((.
...)).))))))..)))).)))..))).))))).))))).))...))))))))))....))))))))).))).)))))..))...)))))))))....
SIMILARITIES| miRBase no hits PMRD ath-miRf10188-akr: 2e-78 microPC no hits | UniProt sp|Q6DF08|UXS1_XENTR: 5e-20 RFAM no hits | most similar mature miRNAs |
Identical with: ath-miRf10188-akr from PMRD (MNEST047288) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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