ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGTTCAAGG mismatches: 4 bulges: 0 |
pre-miRNA
GATATGAAGCTACTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTTGCTTTCCGATTTGAGGATGATCCATGCTTGCATGTGTAGTTTTTTTTGTT
CCTCAGATCTACAAGATCTCGGACCAGGCTTCATTCCCCTCAGGAATAGCTTCAAAATAAT
dot-bracket secondary structure
....((((((((.....(((((((.((((((..(((((((((.((((((((......((((((((((.((.....(((.((....)))))....))...)
)))))))))..)))))))).)))))))))..)))))).))))))).)))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATATGAAGCTACTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTTGCTTTCCGATTTGAGGATGATCCATGCTTGCATGTGTAGTTTTTTTTGTT
CCTCAGATCTACAAGATCTCGGACCAGGCTTCATTCCCCTCAGGAATAGCTTCAAAATAAT
dot-bracket secondary structure
....((((((((.....(((((((.((((((..(((((((((.((((((((......((((((((((.((.....(((.((....)))))....))...)
)))))))))..)))))))).)))))))))..)))))).))))))).)))))))).......
SIMILARITIES| miRBase zma-MIR166b: 8e-46 PMRD zma-miR166b: 8e-46 microPC miR166: 1e-44 | UniProt no hits RFAM mir-166: 6e-47 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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