ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGAGACTGCCTGTG miRNA* CAGGCAAGTCATCCTTGGCTATC mismatches: 0 bulges: 2 |
pre-miRNA
TTCAGATAAGGGGCCCGCCCGGACTAGCCAAGGAGACTGCCTGTGATCGAGGCCACAAGGCGAGCAATAAAACGTGCACAAGGTTTTGCCCGAGCCAAGC
CAAGCCAAGAAGCCACAGGCAAGTCATCCTTGGCTATCTGGACAGACTCTTATCGCCA
dot-bracket secondary structure
....((((((((......(((((.(((((((((((((((((((((.((..(((.....(((..(((........)))....(((((.....)))))..))
)..)))..))...))))))).)))).))))))))))))))).....))))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTCAGATAAGGGGCCCGCCCGGACTAGCCAAGGAGACTGCCTGTGATCGAGGCCACAAGGCGAGCAATAAAACGTGCACAAGGTTTTGCCCGAGCCAAGC
CAAGCCAAGAAGCCACAGGCAAGTCATCCTTGGCTATCTGGACAGACTCTTATCGCCA
dot-bracket secondary structure
....((((((((......(((((.(((((((((((((((((((((.((..(((.....(((..(((........)))....(((((.....)))))..))
)..)))..))...))))))).)))).))))))))))))))).....))))))))....
SIMILARITIES| miRBase zma-MIR169j: 8e-80 PMRD zma-miR169j: 8e-80 microPC miR169: 2e-55 | UniProt no hits RFAM MIR169_5: 9e-80 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
