ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGT mismatches: 0 bulges: 2 |
pre-miRNA
GGCGATAAGAGTCTGTCCAGATAGCCAAGGATGACTTGCCTGTGGCTTCTTGGCTTGGCTTGGCTCGGGCAAAACCTTGTGCACGTTTTATTGCTCGCCT
CGTGGCCTCGATCACAGGCAGTCTCCTTGGCTAGTCCGGGCGGGCCCCTTATC
dot-bracket secondary structure
...((((((.((((((((.((((((((((((.((((.((((((((..((..((((.(((..(((.((.(((........))).)).......))).))).
...))))..)))))))))))))))))))))))).)).))))))))..))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGCGATAAGAGTCTGTCCAGATAGCCAAGGATGACTTGCCTGTGGCTTCTTGGCTTGGCTTGGCTCGGGCAAAACCTTGTGCACGTTTTATTGCTCGCCT
CGTGGCCTCGATCACAGGCAGTCTCCTTGGCTAGTCCGGGCGGGCCCCTTATC
dot-bracket secondary structure
...((((((.((((((((.((((((((((((.((((.((((((((..((..((((.(((..(((.((.(((........))).)).......))).))).
...))))..)))))))))))))))))))))))).)).))))))))..))))))
SIMILARITIES| miRBase zma-MIR169j: 3e-82 PMRD zma-miR169j: 3e-82 microPC miR169: 9e-58 | UniProt no hits RFAM MIR169_5: 6e-81 | most similar mature miRNAs |
Identical with: zma-MIR169j from miRBase (MNEST042752) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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