ABOUT THIS RECORDspecies: Populus tremula
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGACGACTTGTCCG miRNA* GGCAAGCACCTTGGCTAAC mismatches: 2 bulges: 2 |
pre-miRNA
TAAATTCGAGACGATAGCCTTACATGAAGATAAGAGCTTGTTTGGTAGCCAAGGACGACTTGTCCGCCACCATCTTAGTTAGTTCCAGTATAATATTACT
GGGCACCTTCCATTTGGTTTTGGGCAAGCACCTTGGCTAACTGACAAGCTCTTATCAATCATGCTAGGCTCTTTTTCTCTTCT
dot-bracket secondary structure
.......((((.((.(((((..(((((.((((((((((((((...(((((((((....((((((((..((((...........(((((((......))))
)))...........))))..))))))))..)))))))))...))))))))))))))..)))))..)))))..)).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAAATTCGAGACGATAGCCTTACATGAAGATAAGAGCTTGTTTGGTAGCCAAGGACGACTTGTCCGCCACCATCTTAGTTAGTTCCAGTATAATATTACT
GGGCACCTTCCATTTGGTTTTGGGCAAGCACCTTGGCTAACTGACAAGCTCTTATCAATCATGCTAGGCTCTTTTTCTCTTCT
dot-bracket secondary structure
.......((((.((.(((((..(((((.((((((((((((((...(((((((((....((((((((..((((...........(((((((......))))
)))...........))))..))))))))..)))))))))...))))))))))))))..)))))..)))))..)).))))....
SIMILARITIES| miRBase ptc-MIR169af: 3e-36 PMRD ptc-miRf12009-akr: 4e-51 microPC no hits | UniProt no hits RFAM MIR169_5: 7e-44 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
