ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR172a
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGGCATCATCAAGATTCACA miRNA* GGAATCTTGATGATGCTGCAT mismatches: 1 bulges: 0 |
pre-miRNA
TCAGCCAGCCGGTGATTTCTGGAGTGGCATCATCAAGATTCACACACTGCATGCCAACATAATGCGCGTGTTCATGCATCCATCGCCGCCGCTGCATCAT
GCATCATATATAATATATATATATGTGTATGTGTGGGAATCTTGATGATGCTGCATTGGATATCAAGGGCTATATA
dot-bracket secondary structure
......((((..((((.(((((.((((((((((((((((((.(((((.((((((((......)).))))))..(((((..............))))).((
(((.((((((((.....)))))))))))))))))).)))))))))))))))))).))))).))))..)))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCAGCCAGCCGGTGATTTCTGGAGTGGCATCATCAAGATTCACACACTGCATGCCAACATAATGCGCGTGTTCATGCATCCATCGCCGCCGCTGCATCAT
GCATCATATATAATATATATATATGTGTATGTGTGGGAATCTTGATGATGCTGCATTGGATATCAAGGGCTATATA
dot-bracket secondary structure
......((((..((((.(((((.((((((((((((((((((.(((((.((((((((......)).))))))..(((((..............))))).((
(((.((((((((.....)))))))))))))))))).)))))))))))))))))).))))).))))..)))).....
SIMILARITIES| miRBase zma-MIR172e: 7e-62 PMRD zma-miR172e: 7e-62 microPC miR172: 0.000009 | UniProt no hits RFAM mir-172: 3e-49 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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