ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1023
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACACTCTCTCCATTTCTCTGC miRNA* AGAGAATTGAAGAGAGTGCAT mismatches: 4 bulges: 0 |
pre-miRNA
GGGCCAGCTTGCAATTTCATGACACACTCTCTCCATTTCTCTGCCTGTCATGACTTGGTTGATCGATGGAGCGGTGGTTTTCATTGCCCGATTGAGGATC
AGGAGTTGGGGAGAGAATTGAAGAGAGTGCATTGTGAATTGCAAGCTCCTCC
dot-bracket secondary structure
(((..(((((((((((.(((((..((((((((.((.((((((.((((......(((((((..(((((((.(((((((...))))))))).))))).))))
)))...)))).)))))).)).))))))))..)))))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
GGGCCAGCTTGCAATTTCATGACACACTCTCTCCATTTCTCTGCCTGTCATGACTTGGTTGATCGATGGAGCGGTGGTTTTCATTGCCCGATTGAGGATC
AGGAGTTGGGGAGAGAATTGAAGAGAGTGCATTGTGAATTGCAAGCTCCTCC
dot-bracket secondary structure
(((..(((((((((((.(((((..((((((((.((.((((((.((((......(((((((..(((((((.(((((((...))))))))).))))).))))
)))...)))).)))))).)).))))))))..)))))))))))))))))))..
SIMILARITIES| miRBase ppt-MIR1023b: 8e-83 PMRD no hits microPC no hits | UniProt no hits RFAM MIR1023: 1e-81 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
