ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1023
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGAATTGAAGAGAGTGCAT miRNA* ACACTCTCTCCATTTCTCTGC mismatches: 4 bulges: 0 |
pre-miRNA
GGCCAGCTTGCAATTTCATGACACACTCTCTCCATTTCTCTGCCTGTCATGACTTGGTTGATCGATGGAGCGGTGGTTTTCATTGCCCGATTGAGGATCA
GGAGTTGGGGAGAGAATTGAAGAGAGTGCATTGTGAATTGCAAGCTCCTC
dot-bracket secondary structure
((..(((((((((((.(((((..((((((((.((.((((((.((((......(((((((..(((((((.(((((((...))))))))).))))).)))))
))...)))).)))))).)).))))))))..))))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GGCCAGCTTGCAATTTCATGACACACTCTCTCCATTTCTCTGCCTGTCATGACTTGGTTGATCGATGGAGCGGTGGTTTTCATTGCCCGATTGAGGATCA
GGAGTTGGGGAGAGAATTGAAGAGAGTGCATTGTGAATTGCAAGCTCCTC
dot-bracket secondary structure
((..(((((((((((.(((((..((((((((.((.((((((.((((......(((((((..(((((((.(((((((...))))))))).))))).)))))
))...)))).)))))).)).))))))))..))))))))))))))))))..
SIMILARITIES| miRBase ppt-MIR1023b: 1e-81 PMRD no hits microPC no hits | UniProt no hits RFAM MIR1023: 2e-80 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
