ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf714
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAAGGGTCTCGACCTCAAGAC miRNA* TTTGGGGCACTGGGATCCTTTTG mismatches: 3 bulges: 2 |
pre-miRNA
AGACAGTGGTTTTGGAGAAAATTTTGGGGCACTGGGATCCTTTTGTTGAAAAGGGGGAGCATTTGACACAGATGTTGACCCATCATGGGTACCACTTACA
GGCTCAAGGGTCTCGACCTCAAGACTCTTCTCCAACAGCTTTGC
dot-bracket secondary structure
.......((((((((((((..((((((((...((((((((((..(((...(((..((.(((((((...)))))))..(((((...))))).)).)))...
)))..)))))))))).))))))))...)))))))).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGACAGTGGTTTTGGAGAAAATTTTGGGGCACTGGGATCCTTTTGTTGAAAAGGGGGAGCATTTGACACAGATGTTGACCCATCATGGGTACCACTTACA
GGCTCAAGGGTCTCGACCTCAAGACTCTTCTCCAACAGCTTTGC
dot-bracket secondary structure
.......((((((((((((..((((((((...((((((((((..(((...(((..((.(((((((...)))))))..(((((...))))).)).)))...
)))..)))))))))).))))))))...)))))))).))))....
SIMILARITIES| miRBase no hits PMRD ptc-miRf10064-akr: 6e-65 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ptc-miRf10064-akr from PMRD (MNEST051886) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
