ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
miRNA family: MIR1163
source: miRNEST
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGGCATGCTGCGTGCCATGG miRNA* GTGGCCGCACTACGCCGCAT mismatches: 4 bulges: 1 |
pre-miRNA
CGCGTGTGAGACCAAGGGCGCTGTGGCCGCACTACGCCGCATACTGAACCAGGAGCTGGCAGGGCTGGCTATGCGGAGGGCGGCTCCGTAGAGAACCTGC
TGAACGCGCTGGCCAAGGAGCACTTTGATCGCATTGACAACGCGCCCGAGCGCCGGCGCACCGGCAAGAACAAGGACAAGTTTGAGATGCTGCCGTACCC
CGGCAACACGCTCATGGATGAGGCTGACCTGAAGGGCATGCTGCGTGCCATGGCGCCCTTCATCAAGCACCT
dot-bracket secondary structure
.((...(((....((((((((((((((((((.((.(((.((((((...(((.((((.((((((.....((.(((((((.....))))))).))..)))))
)....((((((((...((.((...(((.((.....)))))...))))....))))))))...((((.((((........))))....))))((((.....
)))).....)))).)))....)).))...))...))).)).)))).))))))))))))))..))).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CGCGTGTGAGACCAAGGGCGCTGTGGCCGCACTACGCCGCATACTGAACCAGGAGCTGGCAGGGCTGGCTATGCGGAGGGCGGCTCCGTAGAGAACCTGC
TGAACGCGCTGGCCAAGGAGCACTTTGATCGCATTGACAACGCGCCCGAGCGCCGGCGCACCGGCAAGAACAAGGACAAGTTTGAGATGCTGCCGTACCC
CGGCAACACGCTCATGGATGAGGCTGACCTGAAGGGCATGCTGCGTGCCATGGCGCCCTTCATCAAGCACCT
dot-bracket secondary structure
.((...(((....((((((((((((((((((.((.(((.((((((...(((.((((.((((((.....((.(((((((.....))))))).))..)))))
)....((((((((...((.((...(((.((.....)))))...))))....))))))))...((((.((((........))))....))))((((.....
)))).....)))).)))....)).))...))...))).)).)))).))))))))))))))..))).))....
SIMILARITIES| miRBase cre-MIR1163: 3e-68 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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