ABOUT THIS RECORDspecies: Aplysia californica
miRNA family: mir-4000
source: miRNEST
Taxonomy by NCBI:
Aplysia californica Aplysia Aplysiidae Aplysioidea Aplysiomorpha Opisthobranchia Euthyneura Heterobranchia Apogastropoda Orthogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTTTTTCCACAGGTTTCGG miRNA* GAGGCAGTGTGGTGAAATCAG mismatches: 4 bulges: 2 |
pre-miRNA
GTAACTAAATGTGAGGCAGTGTGGTGAAATCAGGCTCTCGTCAAAATAATCAAAGTGAAGGAACTTGCCTTTTTCCACAGGTTTCGGAATTTTTAT
dot-bracket secondary structure
......((((.((((((..(((((.((((.((((.(((..(((............))).))).))))..)))).))))).))))))..))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GTAACTAAATGTGAGGCAGTGTGGTGAAATCAGGCTCTCGTCAAAATAATCAAAGTGAAGGAACTTGCCTTTTTCCACAGGTTTCGGAATTTTTAT
dot-bracket secondary structure
......((((.((((((..(((((.((((.((((.(((..(((............))).))).))))..)))).))))).))))))..))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
