miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Daphnia pulex



ABOUT THIS RECORD

ID: MNEST008584
species: Daphnia pulex
miRNA family: miR-1638
source: miRNEST

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTCGTTTGTTTTGTTTGTTTG

miRNA*
TGACTGAGACGACGACGACGA

mismatches: 4
bulges: 2

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pre-miRNA
CGATTGTCGCCAGTGTCCAGTGTCGTTTGTTTTGTTTGTTTGTTTTTTTCTGTGTGTTCGTGTCGTGATTGTGTGAGACCCCGTGAGAGCCGAGACGAAA
CGCCTCTCGCCGTTCTTCTTCTTCTTCTTCTGCACGCCCCCGAAATGGCATTGAAAATTGCCTGACTGAGACGACGACGACGACGGGAAACGGAGAGAAG
A


dot-bracket secondary structure
......((.((.((.(((..((((((((((((((.(((...((..(((((...((((.(((.(((.....((((((((......(((((..((((.(((.
.((.....))..))).)))).)))))..))).)))))...))).))))))).)))))..)).))).)))))))..)))))))...))).))))...))..
.



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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