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Species belonging to selected taxon:
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
ABOUT THIS RECORD
ID:
MNEST002329
species:
Raphanus raphanistrum
miRNA family:
MIR2673
source:
miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCTCTTCCTCTTCCTCTTCAT
miRNA*
AGAGAGAAAGAGAGAGAGAGA
mismatches:
5
bulges:
0
View larger
pre-miRNA
ACCAAACATTG
CCTCTTCCTCTTCCTCTTCAT
CCTCCTCCGGTTTTTAACTTTCCAATGAACCAGAGGGAGTATCATATGAACGGATTCTTTGAAGCACC
GCCACCTGGAGCTTCTGCTTACAACAACATTACAAACCAGGCAAGGTTTGGTTCTTCTAACAGCAGCTCCGTACCTTGCTCTATCTCCATGTTAGACGAA
TACTTGTTTTCCCAGATGCAGCAACCGAACTGAG
AGAGAGAAAGAGAGAGAGAGA
TTTTGATG
dot-bracket secondary structure
..((((.(((.
.(((((.(((((.(((((..(
(.(((((.(((((.............))))).)))))(((.((...((..(((.(((...)))...))
).))..(((((((.(((.(((.((.(((....((((((......))))))))).)).)))))).)))))))....(((((.(((((.......((((((.
...))))))....))))).)))))..))))))).
.))))).))))).))))).))
)))))...
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record