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Species belonging to selected taxon:
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
ABOUT THIS RECORD
ID:
MNEST002336
species:
Raphanus raphanistrum
miRNA family:
MIRf449
source:
miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCTTTGCTTCCCCAATGCTG
miRNA*
GCTCAGGAGGCGGAGGAAC
mismatches:
3
bulges:
2
View larger
pre-miRNA
AGGGGCTGTAAAGGAGCACTCTTTCCATCTT
TTCTTTGCTTCCCCAATGCTG
TCTTAAAATCGTCTTCCTCGAGCTCGCTGCCGGAATCGATGGGCTCGA
ACTCCTTGGCGATAGGATCATCGGTGGGCG
GCTCAGGAGGCGGAGGAAC
GTTGAGGGAGTCCTCCTGGATCATGTGC
dot-bracket secondary structure
....((.((..(((((.((((((((.((..(
((((((((((((.....((((
(((....((((...((((.....((((((..(((.((((.....))))
..))).)))))).))))....)))))))))
))...))))))))))))).
)).)))))))).)))))..))...))..
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf10984-akr
:
0.000000002
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record