Parental gene: | LAPTM4A, ENSBTAG00000020894 |
| Aliases: | None |
| Description: | Lysosomal-associated transmembrane protein 4A [Source:UniProtKB/Swiss-Prot;Acc:Q6QRN8] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 11:78862494..78880461(+) |
>ENSBTAG00000020894
ATGGTGTCCATGACTTTCAAGCGGAGCCGCAGCGACCGGTTCTACAGCACCCGGTGCTGCGGCTGTTGCCATGTTCGCAC
CGGGACGATCATCCTGGGGACCTGGTACATGGTGGTCAACCTGTTGATGGCAATTCTGCTGACTGTGGAGGTAACACACC
CAAACTCAATGCCAGCTGTCAACATTCAGTATGAAGTCATTGGCAATTACTATTCGTCTGAGAGAATGGCTGATAATGCC
TGTGTTCTTTTTGCCGTCTCTGTTCTTATGTTTATAATCAGTTCAATGCTGGTATACGGAGCAATTTCTTATCAAGTGGG
TTGGCTGATTCCGTTCTTCTGTTACCGGCTTTTTGACTTTGTTCTCAGCTGCCTGGTTGCTATCAGTTCTCTGACTTACT
TGCCAAGAATCAAAGAATATCTGGATCAGTTACCTGATTTTCCCTATAAAGATGACCTCCTGGCATTGGACTCCAGCTGC
CTCTTGTTCATTGTTCTTGTGTTCTTTGCCTTGTTCATCATTTTTAAGGCTTATCTGATTAACTGTGTTTGGAACTGTTA
TAAATACATCAACAACAGAAACATGCCGGAGATTGCTGTGTACCCAGCCTTTGAGGCGCCTCCACAGTATGTTTTGCCAA
CCTATGAAATGGCAGTGAAGATGCCTGAGAAAGAACCACCACCTCCTTACATACCTGCCTGA
ATGGTGTCCATGACTTTCAAGCGGAGCCGCAGCGACCGGTTCTACAGCACCCGGTGCTGCGGCTGTTGCCATGTTCGCAC
CGGGACGATCATCCTGGGGACCTGGTACATGGTGGTCAACCTGTTGATGGCAATTCTGCTGACTGTGGAGGTAACACACC
CAAACTCAATGCCAGCTGTCAACATTCAGTATGAAGTCATTGGCAATTACTATTCGTCTGAGAGAATGGCTGATAATGCC
TGTGTTCTTTTTGCCGTCTCTGTTCTTATGTTTATAATCAGTTCAATGCTGGTATACGGAGCAATTTCTTATCAAGTGGG
TTGGCTGATTCCGTTCTTCTGTTACCGGCTTTTTGACTTTGTTCTCAGCTGCCTGGTTGCTATCAGTTCTCTGACTTACT
TGCCAAGAATCAAAGAATATCTGGATCAGTTACCTGATTTTCCCTATAAAGATGACCTCCTGGCATTGGACTCCAGCTGC
CTCTTGTTCATTGTTCTTGTGTTCTTTGCCTTGTTCATCATTTTTAAGGCTTATCTGATTAACTGTGTTTGGAACTGTTA
TAAATACATCAACAACAGAAACATGCCGGAGATTGCTGTGTACCCAGCCTTTGAGGCGCCTCCACAGTATGTTTTGCCAA
CCTATGAAATGGCAGTGAAGATGCCTGAGAAAGAACCACCACCTCCTTACATACCTGCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 85 .24 RPM |
| SRP017611_kidney | 248 .59 RPM |
| SRP017611_liver | 110 .54 RPM |
| ERP005899_muscle | 101 .83 RPM |
| ERP005899_liver | 129 .63 RPM |
| SRP030211_testis | 230 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000016959 | within_species_paralog | 3 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000011200 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000007433 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000002569 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000013714 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000012401 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000002909 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_575 | 81.50 | 72.96 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000020894 retrocopies