RetrogeneDB ID: | retro_pvam_847 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_13448:19868..20307(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LAPTM4A | ||
Ensembl ID: | ENSPVAG00000002909 | ||
Aliases: | None | ||
Description: | lysosomal protein transmembrane 4 alpha [Source:HGNC Symbol;Acc:6924] |
Percent Identity: | 78.95 % |
Parental protein coverage: | 63.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | AVSVLMFI-ISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDL |
AVSVLMFI.ISS.LV.GAISYQVG.L..FF.Y.LFDFVLSCLVA.SS.TYLPRIKEYLDQLPDFPYKDDL | |
Retrocopy | AVSVLMFI>ISSKLVHGAISYQVG*LLLFF-YQLFDFVLSCLVAVSSFTYLPRIKEYLDQLPDFPYKDDL |
Parental | LALDSSCLLFIVLVFFALFIIFKA-YLINCVWNCYKYINNRNTPEIAVYPAFEAPPQYVLPTYEMAVKMP |
LAL.S.CL.FIVLV.FALFI.FKA..LINCVWNCYK.I..RN.P.I..Y.AFEAPP.YVLP.YEMA.KMP | |
Retrocopy | LALNSICLPFIVLV-FALFIVFKA<FLINCVWNCYKHIDYRNMPKI-TYSAFEAPPRYVLPIYEMAAKMP |
Parental | E-KEPPPPYIPA |
E.KEP.PPY..A | |
Retrocopy | E>KEPSPPYMLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020894 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011200 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000007433 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002569 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013714 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012401 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002909 | 3 retrocopies |
retro_pvam_779, retro_pvam_847 , retro_pvam_873,
|