RetrogeneDB ID: | retro_pvam_873 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_1429:34916..35418(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LAPTM4A | ||
Ensembl ID: | ENSPVAG00000002909 | ||
Aliases: | None | ||
Description: | lysosomal protein transmembrane 4 alpha [Source:HGNC Symbol;Acc:6924] |
Percent Identity: | 78.61 % |
Parental protein coverage: | 72.1 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | VIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAIS-YQVGWLIPFFCYRLFDFVLSCLVAISSLTYL |
VI..YY.SE.MADNACVLFA.S.L..IISSMLVYGAI..YQVGWLIPFFC..LF..VLSCLVAISSL..L | |
Retrocopy | VIDHYYLSEKMADNACVLFAFSFLISIISSMLVYGAIF<YQVGWLIPFFC*ELFNLVLSCLVAISSLINL |
Parental | PRIKEYLDQLPD-FPYKDDLLALDSSCLLFIVLVFFALFIIF-KAYLINCVWNCYKYINNRNTPEIAVYP |
PRIKEYLDQL.D.F...DDLLALD...LLF.VLVFFALFIIF.KAYLIN.V....KYINNRNT.EIA.YP | |
Retrocopy | PRIKEYLDQLLD>FSCNDDLLALDLN-LLFLVLVFFALFIIF>KAYLINFV*KYNKYINNRNTAEIALYP |
Parental | AFEAPPQYVL-PTYEMAVKMPEKE-PPPPYIPA |
AFEAPPQYVL.P.YEMAVKMPEK..PPPPYIPA | |
Retrocopy | AFEAPPQYVL>PIYEMAVKMPEKD<PPPPYIPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020894 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011200 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000007433 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002569 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013714 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012401 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002909 | 3 retrocopies |
retro_pvam_779, retro_pvam_847, retro_pvam_873 ,
|