RetrogeneDB ID: | retro_btau_575 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 15:24596939..24597447(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LAPTM4A | ||
Ensembl ID: | ENSBTAG00000020894 | ||
Aliases: | None | ||
Description: | Lysosomal-associated transmembrane protein 4A [Source:UniProtKB/Swiss-Prot;Acc:Q6QRN8] |
Percent Identity: | 81.5 % |
Parental protein coverage: | 72.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | YEVIGNYYSSERMADNACVLF-AVSVL-MFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSL |
YEVIGNY.SS.RM.DNACVLF.AVSVL.MF.IS.MLVYG.ISYQ.GWLI...C..LFDF.LSCLVA.SSL | |
Retrocopy | YEVIGNYCSSRRMTDNACVLF>AVSVL>MFTISLMLVYGGISYQLGWLILLVCSWLFDFFLSCLVAFSSL |
Parental | TYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFII-FKAYLINCVWNCYKYINNRNMPEIAV |
TYLPRIK.Y.DQLPDFPYK.DLLA.DSS.LLFIVLVFFALFI..FKAYLINCVW.CY.YI...NM..IAV | |
Retrocopy | TYLPRIKDYMDQLPDFPYKGDLLASDSSYLLFIVLVFFALFIT<FKAYLINCVWDCYEYISS-NML*IAV |
Parental | YPAFEAPPQYVLPTYEMAVKMPEKEPPPPYIPA |
YPAFEAPPQYVLPTYEMAVKMP.KEP.PPYIPA | |
Retrocopy | YPAFEAPPQYVLPTYEMAVKMPGKEPTPPYIPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 129 .63 RPM |
ERP005899_muscle | 0 .00 RPM | 101 .83 RPM |
SRP017611_brain | 0 .00 RPM | 85 .24 RPM |
SRP017611_kidney | 0 .00 RPM | 248 .59 RPM |
SRP017611_liver | 0 .00 RPM | 110 .54 RPM |
SRP030211_testis | 0 .00 RPM | 230 .55 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016959 | 3 retrocopies | |
Bos taurus | ENSBTAG00000020894 | 1 retrocopy |
retro_btau_575 ,
|
Choloepus hoffmanni | ENSCHOG00000011200 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000007433 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002569 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013714 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012401 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002909 | 3 retrocopies |