Parental gene:

HMGN3, ENSCAFG00000002809

Aliases:None
Description:high mobility group nucleosomal binding domain 3 [Source:HGNC Symbol;Acc:12312]
Organism:Dog (Canis familiaris)
Coordinates:12:40136748..40148448(-)


>ENSCAFG00000002809
AGAAACAAATCTCCAGAGAATACAGAGGGCAAGGATGGATCCAAAGTAACTAAACAGGAGCCCACTAGACGGTCTGCCAG
ATTGTCAGCGAAACCCGCTCCACCCAAACCTGAACCTAAACCAAGAAAAACATCTGCTAAGAAAGAACCGGGAACAAAAA
TTAACAAAGGTGCTAAAGGGAAGAAGGAGGAAAAGCAAGAAGCTGGAAAGGAAGGTACTGCACCATCTGAAAATGGTGAA
ACTAAAGCTGAAGAGATCCACATCTCTCGCTCAACTGTTAATGTCTCAACCTCCAGAGGTACCCCACCCAGCACACTGTC
AGTAAAGGGGCAGATTGAAACAGTGAGAGTTAAGGGTACAGTAGAAAATTCTGCATGTTTGCAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 14 .53 RPM
SRP017611_kidney 66 .57 RPM
SRP017611_liver 13 .05 RPM
SRP012049_cerebellum 51 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011031 ortholog_one2one 1 retrogene
retro_amel_1920,
Bos taurus ENSBTAG00000001422 ortholog_one2one 2 retrogenes
retro_btau_1524, retro_btau_1558,
Choloepus hoffmanni ENSCHOG00000007015 ortholog_one2one 1 retrogene
retro_chof_2241,
Callithrix jacchus ENSCJAG00000010800 ortholog_one2one 2 retrogenes
retro_cjac_1626, retro_cjac_819,
Mustela putorius furo ENSMPUG00000018092 ortholog_one2one 1 retrogene
retro_mputfur_1164,
Otolemur garnettii ENSOGAG00000016487 ortholog_one2one 1 retrogene
retro_ogar_190,
Pongo abelii ENSPPYG00000016791 ortholog_one2one 1 retrogene
retro_pabe_421,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1013 71.43 54.69
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Download FASTA sequences of all ENSCAFG00000002809 retrocopies