RetrogeneDB ID: | retro_chof_2241 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_60359:2267..2491(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN3 | ||
Ensembl ID: | ENSCHOG00000007015 | ||
Aliases: | None | ||
Description: | high mobility group nucleosomal binding domain 3 [Source:HGNC Symbol;Acc:12312] |
Percent Identity: | 61.84 % |
Parental protein coverage: | 75.76 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MPKRKXXXXXXXXXXXXXXXXXPTRRSARLSAKPAPP-KPEPKPRKTSAKKEPATKINKGARGKKEEKQE |
MPKRK.................P.RRS..LSAKPA.P.KPE.K.RK.S.KKEP.TKINK.ARGKKEEK.E | |
Retrocopy | MPKRKSPENSEDKYGLKVTKQGPIRRSP*LSAKPASP<KPERKLRKLSGKKEPRTKINKVARGKKEEK*E |
Parental | AGKEGT |
AGKEGT | |
Retrocopy | AGKEGT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011031 | 1 retrocopy | |
Bos taurus | ENSBTAG00000001422 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000002809 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007015 | 1 retrocopy |
retro_chof_2241 ,
|
Callithrix jacchus | ENSCJAG00000010800 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012407 | 2 retrocopies | |
Felis catus | ENSFCAG00000028793 | 1 retrocopy | |
Homo sapiens | ENSG00000118418 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006910 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004351 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018092 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012377 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000016487 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009611 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016791 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018366 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014353 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015468 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000005238 | 3 retrocopies |