Parental gene:

ALYREF, ENSCAFG00000005877

Aliases:None
Description:Aly/REF export factor [Source:HGNC Symbol;Acc:19071]
Organism:Dog (Canis familiaris)
Coordinates:9:399091..402796(+)


>ENSCAFG00000005877
ATGGCCGACAAAATGGACATGTCTCTGGACGACATCATCAAGCTGAACCGGAGCCAGCGAGGCGGCCGCGGCGGAGGTCG
GGGCCGCGGCCGGGCCGGCTCCCAGGGCGGCCGCGGTGGCGGGGCGCAGGCCGCCGCGCGAGTGAGCCGGGGCGGCGGGC
CCATCCGGAACCGACCGGCCCTCGCCCGCGGCGCGGCGGGCGGCGGCGGCAGGAACCGGCCGGCGCCCTACAGCAGGCCG
AAACAACTTCCCGACAAGTGGCAGCACGACCTCTTCGACAGCGGCTTCGGGGGCGGCGCCGGCGTGGAGACGGGTGGGAA
ACTGCTGGTGTCCAACCTGGATTTCGGAGTGTCGGACGCGGATATTCAGGAACTCTTTGCTGAATTCGGAACTCTGAAGA
AGGCAGCTGTACACTATGACCGCTCCGGGCGCAGTTTAGGAACAGCCGATGTGCACTTTGAACGGAAGGCAGATGCCCTA
AAAGCTATGAAACAGTACAACGGCGTCCCTCTGGATGGCCGCCCCATGAACATTCAGCTTGTCACGTCACAGATTGACAC
ACAGCGGAGACCCGCGCAGAGCGTAAACAGAGGTGGGATGACTAGAAACCGTGGCTCTGGAGGTTTCGGTGGTGGCGGCG
GCACCAGGAGAGGCACTCGTGGAGGGAGCCGGGGCAGAGGTCGAGGCACTGGCAGGAGTTCGAAGCAGCAGCTTTCTGCA
GAGGAGTTGGATGCCCAGCTGGATGCTTATAACGCAAGAATGGACACCAGCTAA

Library Parental gene expression (RPM)
SRP017611_brain 14 .05 RPM
SRP017611_kidney 17 .63 RPM
SRP017611_liver 9 .57 RPM
SRP012049_cerebellum 47 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Gorilla gorilla ENSGGOG00000013935 ortholog_one2one 1 retrogene
retro_ggor_2523,
Macaca mulatta ENSMMUG00000012884 ortholog_one2one 1 retrogene
retro_mmul_1679,
Mus musculus ENSMUSG00000025134 ortholog_one2many 1 retrogene
retro_mmus_286,
Sarcophilus harrisii ENSSHAG00000010459 ortholog_one2many 1 retrogene
retro_shar_332,
Tupaia belangeri ENSTBEG00000005834 ortholog_one2many 7 retrogenes
retro_tbel_237, retro_tbel_2432, retro_tbel_251, retro_tbel_2690, retro_tbel_2918, retro_tbel_3933, retro_tbel_3934,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1395 81.63 56.42
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Download FASTA sequences of all ENSCAFG00000005877 retrocopies