RetrogeneDB ID: | retro_cfam_1395 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 3:90688122..90688556(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000030802 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ALYREF | ||
Ensembl ID: | ENSCAFG00000005877 | ||
Aliases: | None | ||
Description: | Aly/REF export factor [Source:HGNC Symbol;Acc:19071] |
Percent Identity: | 81.63 % |
Parental protein coverage: | 56.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKA-MKQYNGVPLDGRPMNIQLV |
.DFGVSD.DIQELFAE.GTLKKAAV..DRSGRSLGTADVHFERKADALKA..KQY.GVP.DGRP.NIQLV | |
Retrocopy | IDFGVSDTDIQELFAESGTLKKAAVQHDRSGRSLGTADVHFERKADALKA<QKQYDGVPVDGRPVNIQLV |
Parental | TSQIDTQRRPAQSVNRGGMTRNRGSGGF-GGGGGTRRGTRGGSRGRGRGTGRSSKQQLSAEELDAQLDAY |
.S..DT....A....RGGMT.NRGSGGF.GGGGGTRRGTRGGSRGRGRGTG.S.KQQLSAEELDAQLDAY | |
Retrocopy | SSRTDTAETRAEH-SRGGMTGNRGSGGFGGGGGGTRRGTRGGSRGRGRGTGGSLKQQLSAEELDAQLDAY |
Parental | NARMDTS |
.AR.DTS | |
Retrocopy | DARVDTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 47 .21 RPM |
SRP017611_brain | 0 .00 RPM | 14 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .63 RPM |
SRP017611_liver | 0 .00 RPM | 9 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005877 | 1 retrocopy |
retro_cfam_1395 ,
|
Gorilla gorilla | ENSGGOG00000013935 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012884 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025134 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010459 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005834 | 7 retrocopies |