RetrogeneDB ID: | retro_mmul_1679 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:50444330..50444820(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | THOC4 | ||
Ensembl ID: | ENSMMUG00000012884 | ||
Aliases: | THOC4, ALYREF | ||
Description: | Aly/REF export factor [Source:RefSeq peptide;Acc:NP_001247942] |
Percent Identity: | 78.57 % |
Parental protein coverage: | 63.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADAL |
L...G..GGAGVETGGKLLVSNLDFGVSDADI.EL.AE.GTLKK.AVHY.RSGR.LG.AD.HFERKA.AL | |
Retrocopy | LASCGPAGGAGVETGGKLLVSNLDFGVSDADIRELLAESGTLKKTAVHYNRSGRPLGSADMHFERKAHAL |
Parental | KAMKQYNGVPLDGRPMNIQLVTSQIDTQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGGARGRGRGA |
KAMKQY.G.PL.G.P.NIQLVTSQI.TQ..PAQSVNRGGMTRN..AGGFGG.GGTR.GT.GGA..R.RGA | |
Retrocopy | KAMKQYHGAPLAGCPVNIQLVTSQIETQQTPAQSVNRGGMTRNHEAGGFGGSGGTRGGTHGGAQERDRGA |
Parental | GRNSKQQL-SAEELDAQLDAYNARMDTS |
GRNSKQQL.SAEE.DA....YNARMDTS | |
Retrocopy | GRNSKQQL>SAEEGDA----YNARMDTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 10 .20 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 18 .48 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .17 RPM |
SRP007412_heart | 0 .00 RPM | 13 .84 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .45 RPM |
SRP007412_liver | 0 .00 RPM | 9 .70 RPM |
SRP007412_testis | 0 .00 RPM | 85 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2523 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005877 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013935 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012884 | 1 retrocopy |
retro_mmul_1679 ,
|
Mus musculus | ENSMUSG00000025134 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010459 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005834 | 7 retrocopies |